SNP Profiles of C SUL 7 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
1._GC-08-261-8-29	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
2._GC-08-261-8-29	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
3._GC-08-261-8-29	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
4._GC-08-261-8-29	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
5._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
6._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
7._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
8._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
9._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
10._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
11._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
12._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
13._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
14._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
15._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
16._C_SUL_7	AT	CT	CC	_	_	_	_	CC	CT	GG	_	CT	_	_
17._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT
18._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT
19._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT
20._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT
21._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
1._GC-08-261-8-29	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
2._GC-08-261-8-29	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
3._GC-08-261-8-29	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
4._GC-08-261-8-29	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
5._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
6._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
7._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
8._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
9._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
10._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
11._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
12._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
13._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
14._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
15._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
16._C_SUL_7	_	_	AG	_	_	GG	_	_	_	_	AT	AT	_	GG
17._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG
18._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG
19._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG
20._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG
21._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	CC	AG	CG
1._GC-08-261-8-29	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	CC	AG	CG
2._GC-08-261-8-29	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	CC	AG	CG
3._GC-08-261-8-29	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	CC	AG	CG
4._GC-08-261-8-29	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	_	AG	CG
5._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
6._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
7._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
8._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
9._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
10._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
11._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
12._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
13._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
14._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
15._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
16._C_SUL_7	AT	_	_	_	CG	_	AG	GT	_	_	AG	_	_	_
17._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	CC	GG	CC
18._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	CC	GG	CC
19._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	CC	GG	CC
20._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	CC	GG	CC
21._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	CC	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GT	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT
1._GC-08-261-8-29	GT	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT
2._GC-08-261-8-29	GT	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT
3._GC-08-261-8-29	GT	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT
4._GC-08-261-8-29	GT	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT
5._C_SUL_7	_	_	CC	_	_	_	_	_	_	_	_	TT	CC	_
6._C_SUL_7	_	_	CC	_	_	_	_	_	_	_	_	TT	CC	_
7._C_SUL_7	_	_	CC	_	_	_	_	_	_	_	_	TT	CC	_
8._C_SUL_7	_	_	CC	_	_	_	_	_	_	_	_	TT	CC	_
9._C_SUL_7	_	_	CC	_	_	_	_	_	_	_	_	TT	CC	_
10._C_SUL_7	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
11._C_SUL_7	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
12._C_SUL_7	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
13._C_SUL_7	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
14._C_SUL_7	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
15._C_SUL_7	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
16._C_SUL_7	_	_	CT	_	_	_	_	_	_	_	_	CT	CT	_
17._NA	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT
18._NA	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT
19._NA	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT
20._NA	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT
21._NA	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AG	CG	CT	TT	AC	CG	AG	AC	AA	GG	GG	AA	CT	CG
1._GC-08-261-8-29	AG	CG	CT	TT	AC	CG	AG	AC	AA	GG	GG	AA	CT	CG
2._GC-08-261-8-29	AG	CG	CT	TT	AC	CG	AG	AC	AA	GG	GG	AA	CT	CG
3._GC-08-261-8-29	AG	CG	CT	TT	AC	CG	AG	AC	AA	GG	GG	AA	CT	CG
4._GC-08-261-8-29	AG	CG	CT	TT	_	CG	AG	AC	AA	GG	GG	AA	CT	CG
5._C_SUL_7	_	CG	_	TT	AC	CG	_	AC	AA	GG	GG	_	_	_
6._C_SUL_7	_	CG	_	TT	AC	CG	_	AC	AA	GG	GG	_	_	_
7._C_SUL_7	_	CG	_	TT	AC	CG	_	AC	AA	GG	GG	_	_	_
8._C_SUL_7	_	CG	_	TT	AC	CG	_	AC	AA	GG	GG	_	_	_
9._C_SUL_7	_	CG	_	TT	_	CG	_	AC	AA	GG	GG	_	_	_
10._C_SUL_7	_	CG	_	CT	CC	GG	_	AC	AA	GG	GT	_	_	_
11._C_SUL_7	_	CG	_	CT	CC	GG	_	AC	AA	GG	GT	_	_	_
12._C_SUL_7	_	CG	_	CT	CC	GG	_	AC	AA	GG	GT	_	_	_
13._C_SUL_7	_	CG	_	CT	CC	GG	_	AC	AA	GG	GT	_	_	_
14._C_SUL_7	_	CG	_	CT	CC	GG	_	AC	AA	GG	GT	_	_	_
15._C_SUL_7	_	CG	_	CT	CC	GG	_	AC	AA	GG	GT	_	_	_
16._C_SUL_7	_	CG	_	CT	CC	CG	_	CC	AA	GT	GG	_	_	_
17._NA	GG	CG	CC	CT	CC	GG	GG	AC	AA	GG	GT	AA	CC	CC
18._NA	GG	CG	CC	CT	CC	GG	GG	AC	AA	GG	GT	AA	CC	CC
19._NA	GG	CG	CC	CT	CC	GG	GG	AC	AA	GG	GT	AA	CC	CC
20._NA	GG	CG	CC	CT	CC	GG	GG	AC	AA	GG	GT	AA	CC	CC
21._NA	GG	CG	CC	CT	CC	GG	GG	AC	AA	GG	GT	AA	CC	CC

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AG	CT	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC
1._GC-08-261-8-29	AG	CT	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC
2._GC-08-261-8-29	AG	CT	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC
3._GC-08-261-8-29	AG	CT	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC
4._GC-08-261-8-29	AG	CT	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC
5._C_SUL_7	AG	CT	_	_	_	_	_	AC	CG	_	_	_	CT	CC
6._C_SUL_7	AG	CT	_	_	_	_	_	AC	CG	_	_	_	CT	CC
7._C_SUL_7	AG	CT	_	_	_	_	_	AC	CG	_	_	_	CT	CC
8._C_SUL_7	AG	CT	_	_	_	_	_	AC	CG	_	_	_	CT	CC
9._C_SUL_7	AG	CT	_	_	_	_	_	AC	CG	_	_	_	CT	CC
10._C_SUL_7	AG	CT	_	_	_	_	_	AC	CC	_	_	_	CC	CC
11._C_SUL_7	AA	CT	_	_	_	_	_	AC	CC	_	_	_	CC	CC
12._C_SUL_7	AA	CT	_	_	_	_	_	AC	CC	_	_	_	CC	CC
13._C_SUL_7	AA	CT	_	_	_	_	_	AC	CC	_	_	_	CC	CC
14._C_SUL_7	AA	CT	_	_	_	_	_	AC	CC	_	_	_	CC	CC
15._C_SUL_7	AA	_	_	_	_	_	_	AC	CC	_	_	_	CC	_
16._C_SUL_7	AG	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT
17._NA	AA	CT	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	CC
18._NA	AA	CT	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	CC
19._NA	AA	CT	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	CC
20._NA	AA	CT	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	CC
21._NA	AA	_	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	_

	85	86	87	88	89	90	91	92	93
_Input profile	CC	CT	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-08-261-8-29	CC	CT	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
2._GC-08-261-8-29	CC	CT	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
3._GC-08-261-8-29	CC	CT	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
4._GC-08-261-8-29	CC	CT	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
5._C_SUL_7	CC	_	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X
6._C_SUL_7	CC	_	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X
7._C_SUL_7	CC	_	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X
8._C_SUL_7	CC	_	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X
9._C_SUL_7	CC	_	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X
10._C_SUL_7	CC	_	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
11._C_SUL_7	CC	_	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
12._C_SUL_7	CC	_	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
13._C_SUL_7	CC	_	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
14._C_SUL_7	CC	_	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
15._C_SUL_7	CC	_	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
16._C_SUL_7	CT	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
17._NA	CC	CC	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X
18._NA	CC	CC	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X
19._NA	CC	CC	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X
20._NA	CC	CC	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X
21._NA	CC	CC	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: C_SUL_7 GC-08-261-8-29

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

1._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

2._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._C_SUL_7

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 5

Dapeng Zhang, 2016

6._C_SUL_7

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 3

Dapeng Zhang, 2016

7._C_SUL_7

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 4

Dapeng Zhang, 2016

8._C_SUL_7

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 7

Dapeng Zhang, 2016

9._C_SUL_7

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._C_SUL_7

76.9 %
39 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P95 583

Dapeng Zhang, 2016

11._C_SUL_7

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._C_SUL_7

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 5

Dapeng Zhang, 2016

13._C_SUL_7

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 6

Dapeng Zhang, 2016

14._C_SUL_7

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 7

Dapeng Zhang, 2016

15._C_SUL_7

74.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 3

Dapeng Zhang, 2016

16._C_SUL_7

69.2 %
39 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

17._C_SUL_7 NA

68.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

18._C_SUL_7 NA

68.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

19._C_SUL_7 NA

68.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

20._C_SUL_7 NA

68.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

21._C_SUL_7 NA

68.1 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240